RNifti - Fast R and C++ Access to NIfTI Images
Provides very fast read and write access to images stored in the NIfTI-1, NIfTI-2 and ANALYZE-7.5 formats, with seamless synchronisation of in-memory image objects between compiled C and interpreted R code. Also provides a simple image viewer, and a C/C++ API that can be used by other packages. Not to be confused with 'RNiftyReg', which performs image registration and applies spatial transformations.
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medical-imagingnifti-formatzlibcpp
10.50 score 56 stars 62 dependents 560 scripts 4.5k downloadsshades - Simple Colour Manipulation
Functions for easily manipulating colours, creating colour scales and calculating colour distances.
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colorcolor-manipulationcolourcolour-manipulationcolour-spaces
10.29 score 86 stars 39 dependents 270 scripts 18k downloadsRNiftyReg - Image Registration Using the 'NiftyReg' Library
Provides an 'R' interface to the 'NiftyReg' image registration tools <https://github.com/KCL-BMEIS/niftyreg>. Linear and nonlinear registration are supported, in two and three dimensions.
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image-registrationmedical-imagingtransformationscppopenmp
7.39 score 45 stars 15 dependents 51 scripts 2.4k downloadsmmand - Mathematical Morphology in Any Number of Dimensions
Provides tools for performing mathematical morphology operations, such as erosion and dilation, on data of arbitrary dimensionality. Can also be used for finding connected components, resampling, filtering, smoothing and other image processing-style operations.
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image-processingmorphologyresamplingcppopenmp
6.98 score 40 stars 7 dependents 174 scripts 1.3k downloadstractor.base - Read, Manipulate and Visualise Magnetic Resonance Images
Functions for working with magnetic resonance images. Reading and writing of popular file formats (DICOM, Analyze, NIfTI-1, NIfTI-2, MGH); interactive and non-interactive visualisation; flexible image manipulation; metadata and sparse image handling.
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brain-imaginggraph-algorithmsparcellationtractography
6.98 score 30 stars 1 dependents 35 scripts 400 downloadsore - An R Interface to the Onigmo Regular Expression Library
Provides an alternative to R's built-in functionality for handling regular expressions, based on the Onigmo library. Offers first-class compiled regex objects, partial matching and function-based substitutions, amongst other features.
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regexregular-expressionstext-analysis
6.83 score 56 stars 6 dependents 135 scripts 641 downloadsdivest - Get Images Out of DICOM Format Quickly
Provides tools to sort DICOM-format medical image files, and convert them to NIfTI-1 format.
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conversiondicommedical-imagingopenjpeg2cpp
6.36 score 15 stars 36 scripts 393 downloadsreportr - A General Message and Error Reporting System
Provides a system for reporting messages, which provides certain useful features over the standard R system, such as the incorporation of output consolidation, message filtering, assertions, expression substitution, automatic generation of stack traces for debugging, and conditional reporting based on the current "output level".
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4.62 score 7 stars 4 dependents 3 scripts 472 downloadssoma - General-Purpose Optimisation with the Self-Organising Migrating Algorithm
An R implementation of the Self-Organising Migrating Algorithm, a general-purpose, stochastic optimisation algorithm. The approach is similar to that of genetic algorithms, although it is based on the idea of a series of ``migrations'' by a fixed set of individuals, rather than the development of successive generations. It can be applied to any cost-minimisation problem with a bounded parameter space, and is robust to local minima.
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4.38 score 8 stars 1 dependents 5 scripts 319 downloadsarrg - Flexible Argument Parsing for R Scripts
Argument parsing for R scripts, with support for long and short Unix-style options including option clustering, positional arguments including those of variable length, and multiple usage patterns which may take different subsets of options.
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command-linecommand-line-parser
3.54 score 7 stars 3 scripts 185 downloadsRcppArray - 'Rcpp' Meets 'C++' Arrays
Interoperability between 'Rcpp' and the 'C++11' array and tuple types. Linking to this package allows fixed-length 'std::array' objects to be converted to and from equivalent R vectors, and 'std::tuple' objects converted to lists, via the as() and wrap() functions. There is also experimental support for 'std::span' from 'C++20'.
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arraycpp11cpp20rcppspancpp
3.48 score 6 stars 5 scripts 202 downloadsloder - Dependency-Free Access to PNG Image Files
Read and write access to PNG image files using the LodePNG library. The package has no external dependencies.
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imageimage-processingpng
3.35 score 3 stars 15 scripts 210 downloadsmritc - MRI Tissue Classification
Implements various methods for tissue classification in magnetic resonance (MR) images of the brain, including normal mixture models and hidden Markov normal mixture models, as outlined in Feng & Tierney (2011) <doi:10.18637/jss.v044.i07>. These methods allow a structural MR image to be classified into gray matter, white matter and cerebrospinal fluid tissue types.
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openmp
2.08 score 1 stars 12 scripts 185 downloads