Package: RNifti 1.9.0

RNifti: Fast R and C++ Access to NIfTI Images

Provides very fast read and write access to images stored in the NIfTI-1, NIfTI-2 and ANALYZE-7.5 formats, with seamless synchronisation of in-memory image objects between compiled C and interpreted R code. Also provides a simple image viewer, and a C/C++ API that can be used by other packages. Not to be confused with 'RNiftyReg', which performs image registration and applies spatial transformations.

Authors:Jon Clayden [cre, aut], Bob Cox [aut], Mark Jenkinson [aut], Matt Hall [ctb], Rick Reynolds [ctb], Kate Fissell [ctb], Jean-loup Gailly [cph], Mark Adler [cph]

RNifti_1.9.0.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
RNifti/json (API)
NEWS

# Install 'RNifti' in R:
install.packages('RNifti', repos = c('https://jonclayden.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jonclayden/rnifti/issues

Uses libs:
  • zlib– Compression library
  • c++– GNU Standard C++ Library v3

On CRAN:

Conda:

medical-imagingnifti-formatzlibcpp

10.50 score 56 stars 62 packages 560 scripts 4.5k downloads 3 mentions 40 exports 1 dependencies

Last updated from:9cee127fe2. Checks:13 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-arm64OK161
linux-devel-x86_64OK112
source / vignettesOK163
linux-release-arm64OK161
linux-release-x86_64OK120
macos-release-arm64OK112
macos-release-x86_64OK270
macos-oldrel-arm64OK89
macos-oldrel-x86_64OK287
windows-develOK101
windows-releaseOK109
windows-oldrelOK100
wasm-releaseOK92

Exports:analyzeHeaderasNiftichannelsdefaultInfoPaneldumpNiftiextensionextension<-ExtensionCodesextensionsextensions<-fromBidsJsonimageAttributesimageAttributes<-lyrndimniftiHeaderniftiVersionorientationorientation<-originpixdimpixdim<-pixunitspixunits<-qform<-readAnalyzereadNiftiretrieveNiftirgbArrayrotationsform<-timeSeriesPaneltoBidsJsonupdateNiftiviewvoxelToWorldworldToVoxelwriteAnalyzewriteNiftixform

Dependencies:Rcpp

Readme and manuals

Help Manual

Help pageTopics
Access to metadata elements$.niftiImage $<-.niftiImage
Create or modify an NIfTI image objectasNifti asNifti.default retrieveNifti updateNifti
Extract channels from RGB datachannels
Info panels for the built-in viewerdefaultInfoPanel timeSeriesPanel
Internal imagesas.array.internalImage dim.internalImage dim<-.internalImage internalImage [.internalImage [<-.internalImage
NIfTI extension codesExtensionCodes
NIfTI extensionsextension extension<- extensions extensions<-
Conversion to and from BIDS JSONfromBidsJson toBidsJson
Extended image attributesimageAttributes imageAttributes<-
Number of dimensionsndim
Dump or construct a raw NIfTI or ANALYZE headeranalyzeHeader dumpNifti niftiHeader print.analyzeHeader print.niftiHeader
Check the format version of a fileniftiVersion
Pixel dimensions and unitspixdim pixdim.default pixdim<- pixdim<-.default pixunits pixunits.default pixunits<- pixunits<-.default
Read NIfTI or ANALYZE format filesreadAnalyze readNifti
RGB arraysas.character.rgbArray as.raster.rgbArray rgbArray [.rgbArray
A basic 3D image viewerlyr view
Transform points between voxel and ``world'' coordinatesorigin voxelToWorld worldToVoxel
Write a NIfTI or ANALYZE format filewriteAnalyze writeNifti
Obtain or replace the ``xform'' transforms for an imageorientation orientation<- qform<- rotation sform<- xform