Package: RNiftyReg 2.8.5

RNiftyReg: Image Registration Using the 'NiftyReg' Library

Provides an 'R' interface to the 'NiftyReg' image registration tools <https://github.com/KCL-BMEIS/niftyreg>. Linear and nonlinear registration are supported, in two and three dimensions.

Authors:Jon Clayden [cre, aut], Marc Modat [aut], Benoit Presles [aut], Thanasis Anthopoulos [aut], Pankaj Daga [aut]

RNiftyReg_2.8.5.tar.gz
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RNiftyReg_2.8.5.tgz(r-4.6-x86_64)RNiftyReg_2.8.5.tgz(r-4.6-arm64)RNiftyReg_2.8.5.tgz(r-4.5-x86_64)RNiftyReg_2.8.5.tgz(r-4.5-arm64)
RNiftyReg_2.8.5.tar.gz(r-4.7-arm64)RNiftyReg_2.8.5.tar.gz(r-4.7-x86_64)RNiftyReg_2.8.5.tar.gz(r-4.6-arm64)RNiftyReg_2.8.5.tar.gz(r-4.6-x86_64)
RNiftyReg_2.8.5.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
card.svg |card.png
RNiftyReg/json (API)
NEWS

# Install 'RNiftyReg' in R:

install.packages('RNiftyReg', repos = c('https://jonclayden.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/jonclayden/rniftyreg/issues

Uses libs:

c++– GNU Standard C++ Library v3
openmp– GCC OpenMP (GOMP) support library

On CRAN:

image-registration medical-imaging transformations cpp openmp

7.39 score 45 stars 15 packages 51 scripts 2.4k downloads 40 exports 3 dependencies

Last updated from:3622de6a28. Checks:13 OK. Indexed: yes.

Target	Result	Time
linux-devel-arm64	OK	275
linux-devel-x86_64	OK	270
source / vignettes	OK	335
linux-release-arm64	OK	304
linux-release-x86_64	OK	272
macos-release-arm64	OK	182
macos-release-x86_64	OK	359
macos-oldrel-arm64	OK	214
macos-oldrel-x86_64	OK	424
windows-devel	OK	359
windows-release	OK	403
windows-oldrel	OK	338
wasm-release	OK	250

Exports:applyTransform asAffine buildAffine composeTransforms decomposeAffine deformationField dumpNifti forward halfTransform invertAffine isAffine isImage jacobian loadTransform ndim niftyreg niftyreg.linear niftyreg.nonlinear pixdim pixdim<-pixunits pixunits<-qform<-readAffine readNifti rescale retrieveNifti reverse rotate saveTransform sform<-similarity skew translate updateNifti voxelToWorld worldToVoxel writeAffine writeNifti xform

Dependencies:Rcpp RcppEigen RNifti

Citation

Development and contributors

Readme and manuals

Help Manual

Help page	Topics
Apply a precomputed transformation	applyTransform
Build an affine matrix up from its constituent transformations	buildAffine
Compose transformations	composeTransforms
Decompose an affine matrix into its constituent transformations	decomposeAffine
Calculate the deformation field for a transformation	deformationField
Extract forward and reverse transformations	forward forward.niftyreg reverse reverse.niftyreg
Calculate a half transformation	halfTransform
Invert an affine matrix	invertAffine
Create, test for and print affine matrices	affine asAffine asAffine.affine asAffine.default asAffine.niftiImage asAffine.niftyreg asAffine.niftyregRDS isAffine print.affine
Test whether an object represents an image	isImage
Extract a Jacobian determinant map	jacobian
Two and three dimensional image registration	as.array.niftyreg asNifti.niftyreg niftyreg
Two and three dimensional linear image registration	niftyreg.linear
Two and three dimensional nonlinear image registration	niftyreg.nonlinear
Read an affine matrix from a file	readAffine
Read a NIfTI format file	readNifti
Save and load transform objects	loadTransform saveTransform
Similarity measures between images	similarity
Apply simple transformations	rescale rotate skew translate
Write an affine matrix to a file	writeAffine