Package: imbibe 0.1.0

imbibe: A Pipe-Friendly Image Calculator

Provides a set of fast, chainable image-processing operations which are applicable to images of two, three or four dimensions, particularly medical images.

Authors:Jon Clayden [aut, cre], Chris Rorden [aut], John Muschelli [ctb], Exstrom Laboratories LLC [cph]

imbibe_0.1.0.tar.gz
imbibe_0.1.0.zip(r-4.5)imbibe_0.1.0.zip(r-4.4)imbibe_0.1.0.zip(r-4.3)
imbibe_0.1.0.tgz(r-4.4-x86_64)imbibe_0.1.0.tgz(r-4.4-arm64)imbibe_0.1.0.tgz(r-4.3-x86_64)imbibe_0.1.0.tgz(r-4.3-arm64)
imbibe_0.1.0.tar.gz(r-4.5-noble)imbibe_0.1.0.tar.gz(r-4.4-noble)
imbibe.pdf |imbibe.html✨
imbibe/json (API)
NEWS

# Install 'imbibe' in R:
install.packages('imbibe', repos = c('https://jonclayden.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Bug tracker:https://github.com/jonclayden/imbibe/issues

On CRAN:

49 exports 14 stars 4.32 score 3 dependencies 3 scripts 218 downloads

Last updated 4 years agofrom:33173530cc. Checks:OK: 5 WARNING: 4. Indexed: yes.

TargetResultDate
Doc / VignettesOKSep 07 2024
R-4.5-win-x86_64OKSep 07 2024
R-4.5-linux-x86_64OKSep 07 2024
R-4.4-win-x86_64OKSep 07 2024
R-4.4-mac-x86_64WARNINGSep 07 2024
R-4.4-mac-aarch64WARNINGSep 07 2024
R-4.3-win-x86_64OKSep 07 2024
R-4.3-mac-x86_64WARNINGSep 07 2024
R-4.3-mac-aarch64WARNINGSep 07 2024

Exports:%>%absoluteaddarccosinearcsinearctangentbinarisebinarizecosinedilatedilatealldim_AR1dim_maxdim_meandim_mediandim_mindim_quantiledim_sddim_whichmaxdivideerodeexpect_pipeline_resultexponentfilter_meanfilter_medianimbibekernel_2dkernel_3dkernel_boxkernel_filekernel_gausskernel_spherelogarithmmaskmaximumminimummultiplyreciprocalremainderrunsinesmooth_gausssquaresquarerootsubtracttangentthresholdthreshold_abovethreshold_below

Dependencies:magrittrRcppRNifti

Readme and manuals

Help Manual

Help pageTopics
Basic binary operationsadd divide mask maximum minimum multiply remainder subtract
Mathematical morphology and filtering operationsdilate dilateall erode filter_mean filter_median smooth_gauss subsample
Dimensionality reduction operationsdim_AR1 dim_max dim_mean dim_median dim_min dim_quantile dim_sd dim_whichmax
Expectation for testing pipeline outputexpect_pipeline_result
Basic unary operationsabsolute arccosine arcsine arctangent binarise binarize cosine exponent logarithm reciprocal sine square squareroot tangent
Create an operation pipelineas.array.imbibe asNifti.imbibe imbibe print.imbibe
Mathematical morphology kernelskernels kernel_2d kernel_3d kernel_box kernel_file kernel_gauss kernel_sphere
Run a pipeline and return an image resultrun
Image thresholdingthreshold threshold_above threshold_below